3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
9NJV|1|R3|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_148 not in the Motif Atlas
Homologous match to IL_5J7L_033
Geometric discrepancy: 0.1377
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

9NJV|1|R3|U|662
9NJV|1|R3|A|663
9NJV|1|R3|G|664
9NJV|1|R3|A|665
9NJV|1|R3|G|666
*
9NJV|1|R3|U|740
9NJV|1|R3|G|741
9NJV|1|R3|G|742
9NJV|1|R3|A|743

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sf
30S ribosomal protein S6, non-modified isoform
Chain so
Small ribosomal subunit protein uS15
Chain sr
30S ribosomal protein S18

Coloring options:


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