IL_9NJV_153

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_153 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1096

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9NJV|1|R3|G|887
9NJV|1|R3|G|888
9NJV|1|R3|A|889
9NJV|1|R3|G|890
9NJV|1|R3|U|891
9NJV|1|R3|A|892
9NJV|1|R3|C|893
9NJV|1|R3|G|894
*
9NJV|1|R3|U|905
9NJV|1|R3|A|906
9NJV|1|R3|A|907
9NJV|1|R3|A|908
9NJV|1|R3|A|909
9NJV|1|R3|C|910

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12