IL_9NJV_156

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9NJV|1|R3|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_156 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.158

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9NJV|1|R3|G|933
9NJV|1|R3|C|934
9NJV|1|R3|A|935
*
9NJV|1|R3|U|1380
9NJV|1|R3|U|1381
9NJV|1|R3|C|1382
9NJV|1|R3|C|1383
9NJV|1|R3|C|1384

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain sg

30S ribosomal protein S7

Chain si

Small ribosomal subunit protein uS9