IL_9NKL_163

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

9NKL|1|R3|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_163 not in the Motif Atlas

Homologous match to IL_6CZR_160

Geometric discrepancy: 0.2732

The information below is about IL_6CZR_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.1

Basepair signature

cWW-tWH-tWH-L-R-L-R-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9NKL|1|R3|U|1247
9NKL|1|R3|A|1248
9NKL|1|R3|C|1249
9NKL|1|R3|A|1250
9NKL|1|R3|A|1251
9NKL|1|R3|A|1252
9NKL|1|R3|G|1253
*
9NKL|1|R3|C|1284
9NKL|1|R3|A|1285
9NKL|1|R3|U|1286
9NKL|1|R3|A|1287
9NKL|1|R3|A|1288
9NKL|1|R3|A|1289
9NKL|1|R3|G|1290

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sg

30S ribosomal protein S7

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10