IL_9NL5_106

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9NL5|1|R1|U|2689, 9NL5|1|R1|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_106 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0586

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9NL5|1|R1|U|2687
9NL5|1|R1|G|2688
9NL5|1|R1|U|2689
9NL5|1|R1|U|2690
9NL5|1|R1|C|2691
*
9NL5|1|R1|G|2718
9NL5|1|R1|G|2719
9NL5|1|R1|U|2720
9NL5|1|R1|A|2721
9NL5|1|R1|G|2722

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 19

50S ribosomal protein L19

Chain 3

50S ribosomal protein L3