IL_9NL6_038

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9NL6|1|R1|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_038 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0826

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9NL6|1|R1|G|1031
9NL6|1|R1|A|1032
9NL6|1|R1|U|1033
9NL6|1|R1|G|1034
*
9NL6|1|R1|C|1121
9NL6|1|R1|G|1122
9NL6|1|R1|C|1123

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 36

50S ribosomal protein L36

Chain R2

5S ribosomal RNA; 5S rRNA