IL_9NL7_169
3D structure
- PDB id
- 9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 9NL7|1|R3|A|1257, 9NL7|1|R3|A|1280, 9NL7|1|R3|C|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NL7_169 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.4341
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9NL7|1|R3|G|1255
9NL7|1|R3|A|1256
9NL7|1|R3|A|1257
9NL7|1|R3|G|1258
*
9NL7|1|R3|C|1277
9NL7|1|R3|G|1278
9NL7|1|R3|G|1279
9NL7|1|R3|A|1280
9NL7|1|R3|C|1281
9NL7|1|R3|C|1282
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sc
- Small ribosomal subunit protein uS3
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
- Chain sn
- Small ribosomal subunit protein uS14
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