IL_9NLE_103

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9NLE|1|R1|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_103 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1216

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9NLE|1|R1|C|2636
9NLE|1|R1|U|2637
9NLE|1|R1|G|2638
9NLE|1|R1|A|2639
9NLE|1|R1|G|2640
*
9NLE|1|R1|C|2774
9NLE|1|R1|G|2775
9NLE|1|R1|A|2776
9NLE|1|R1|G|2777
9NLE|1|R1|A|2778
9NLE|1|R1|U|2779
9NLE|1|R1|G|2780
9NLE|1|R1|A|2781
9NLE|1|R1|G|2782

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 3

50S ribosomal protein L3