IL_9NLF_101

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9NLF|1|R1|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_101 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1023

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9NLF|1|R1|C|2636
9NLF|1|R1|U|2637
9NLF|1|R1|G|2638
9NLF|1|R1|A|2639
9NLF|1|R1|G|2640
*
9NLF|1|R1|C|2774
9NLF|1|R1|G|2775
9NLF|1|R1|A|2776
9NLF|1|R1|G|2777
9NLF|1|R1|A|2778
9NLF|1|R1|U|2779
9NLF|1|R1|G|2780
9NLF|1|R1|A|2781
9NLF|1|R1|G|2782

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 3

50S ribosomal protein L3