3D structure

PDB id
9NLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with YheS-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAC*GC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLH_128 not in the Motif Atlas
Geometric match to IL_3MXH_005
Geometric discrepancy: 0.3239
The information below is about IL_3MXH_005
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
8

Unit IDs

9NLH|1|R3|G|203
9NLH|1|R3|G|204
9NLH|1|R3|A|205
9NLH|1|R3|C|206
*
9NLH|1|R3|G|213
9NLH|1|R3|C|214

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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