IL_9NLH_128

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_128 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.3239

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

9NLH|1|R3|G|203
9NLH|1|R3|G|204
9NLH|1|R3|A|205
9NLH|1|R3|C|206
*
9NLH|1|R3|G|213
9NLH|1|R3|C|214

Current chains

Chain R3

16S ribosomal RNA

Nearby chains