IL_9NLJ_037

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9NLJ|1|R1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_037 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1365

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9NLJ|1|R1|U|1018
9NLJ|1|R1|U|1019
9NLJ|1|R1|A|1020
9NLJ|1|R1|A|1021
9NLJ|1|R1|G|1022
9NLJ|1|R1|U|1023
9NLJ|1|R1|G|1024
*
9NLJ|1|R1|C|1140
9NLJ|1|R1|U|1141
9NLJ|1|R1|A|1142
9NLJ|1|R1|A|1143
9NLJ|1|R1|A|1144

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6