IL_9NLJ_103

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

9NLJ|1|R1|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_103 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1083

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9NLJ|1|R1|U|2680
9NLJ|1|R1|C|2681
9NLJ|1|R1|A|2682
9NLJ|1|R1|C|2683
9NLJ|1|R1|U|2684
*
9NLJ|1|R1|A|2725
9NLJ|1|R1|A|2726
9NLJ|1|R1|A|2727

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 17

Large ribosomal subunit protein bL17

Chain 19

50S ribosomal protein L19

Chain 3

50S ribosomal protein L3