IL_9NLJ_128

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9NLJ|1|R3|U|244, 9NLJ|1|R3|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_128 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1583

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9NLJ|1|R3|G|242
9NLJ|1|R3|A|243
9NLJ|1|R3|U|244
9NLJ|1|R3|U|245
9NLJ|1|R3|A|246
9NLJ|1|R3|G|247
*
9NLJ|1|R3|C|277
9NLJ|1|R3|G|278
9NLJ|1|R3|A|279
9NLJ|1|R3|C|280
9NLJ|1|R3|G|281
9NLJ|1|R3|A|282
9NLJ|1|R3|U|283
9NLJ|1|R3|C|284

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17