IL_9NLJ_149

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9NLJ|1|R3|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_149 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1385

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9NLJ|1|R3|U|684
9NLJ|1|R3|G|685
9NLJ|1|R3|U|686
9NLJ|1|R3|A|687
9NLJ|1|R3|G|688
*
9NLJ|1|R3|C|699
9NLJ|1|R3|G|700
9NLJ|1|R3|U|701
9NLJ|1|R3|A|702
9NLJ|1|R3|G|703
9NLJ|1|R3|A|704
9NLJ|1|R3|G|705
9NLJ|1|R3|A|706

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain U

Uup

Chain sk

Small ribosomal subunit protein uS11