IL_9NLJ_169

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_169 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1013

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9NLJ|1|R3|C|1303
9NLJ|1|R3|G|1304
9NLJ|1|R3|G|1305
9NLJ|1|R3|A|1306
9NLJ|1|R3|U|1307
9NLJ|1|R3|U|1308
*
9NLJ|1|R3|A|1329
9NLJ|1|R3|U|1330
9NLJ|1|R3|G|1331
9NLJ|1|R3|A|1332
9NLJ|1|R3|A|1333
9NLJ|1|R3|G|1334

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain U

Uup

Chain sm

30S ribosomal protein S13