IL_9NLQ_033

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9NLQ|1|R1|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_033 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0993

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9NLQ|1|R1|C|998
9NLQ|1|R1|U|999
9NLQ|1|R1|A|1000
9NLQ|1|R1|A|1001
9NLQ|1|R1|G|1002
*
9NLQ|1|R1|C|1153
9NLQ|1|R1|G|1154
9NLQ|1|R1|A|1155
9NLQ|1|R1|A|1156
9NLQ|1|R1|G|1157

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20

Chain 30

50S ribosomal protein L30

Chain R2

5S ribosomal RNA; 5S rRNA