IL_9NLQ_069

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9NLQ|1|R1|A|1801, 9NLQ|1|R1|C|1816, 9NLQ|1|R1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0874

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9NLQ|1|R1|U|1798
9NLQ|1|R1|G|1799
9NLQ|1|R1|C|1800
9NLQ|1|R1|A|1801
9NLQ|1|R1|A|1802
9NLQ|1|R1|A|1803
9NLQ|1|R1|C|1804
*
9NLQ|1|R1|G|1813
9NLQ|1|R1|G|1814
9NLQ|1|R1|A|1815
9NLQ|1|R1|C|1816
9NLQ|1|R1|G|1817
9NLQ|1|R1|U|1818
9NLQ|1|R1|A|1819
9NLQ|1|R1|U|1820
9NLQ|1|R1|A|1821

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA