IL_9NLQ_100

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9NLQ|1|R1|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_100 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0991

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9NLQ|1|R1|C|2636
9NLQ|1|R1|U|2637
9NLQ|1|R1|G|2638
9NLQ|1|R1|A|2639
9NLQ|1|R1|G|2640
*
9NLQ|1|R1|C|2774
9NLQ|1|R1|G|2775
9NLQ|1|R1|A|2776
9NLQ|1|R1|G|2777
9NLQ|1|R1|A|2778
9NLQ|1|R1|U|2779
9NLQ|1|R1|G|2780
9NLQ|1|R1|A|2781
9NLQ|1|R1|G|2782

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 3

50S ribosomal protein L3