IL_9NLQ_147
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 9NLQ|1|R3|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLQ_147 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.1383
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9NLQ|1|R3|U|684
9NLQ|1|R3|G|685
9NLQ|1|R3|U|686
9NLQ|1|R3|A|687
9NLQ|1|R3|G|688
*
9NLQ|1|R3|C|699
9NLQ|1|R3|G|700
9NLQ|1|R3|U|701
9NLQ|1|R3|A|702
9NLQ|1|R3|G|703
9NLQ|1|R3|A|704
9NLQ|1|R3|G|705
9NLQ|1|R3|A|706
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- Probable ATP-binding protein YbiT
- Chain sk
- Small ribosomal subunit protein uS11
Coloring options: