IL_9NLQ_159
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAUGG*UCAUCAUG
- Length
- 15 nucleotides
- Bulged bases
- 9NLQ|1|R3|C|1054, 9NLQ|1|R3|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLQ_159 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.1764
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9NLQ|1|R3|U|1052
9NLQ|1|R3|G|1053
9NLQ|1|R3|C|1054
9NLQ|1|R3|A|1055
9NLQ|1|R3|U|1056
9NLQ|1|R3|G|1057
9NLQ|1|R3|G|1058
*
9NLQ|1|R3|U|1199
9NLQ|1|R3|C|1200
9NLQ|1|R3|A|1201
9NLQ|1|R3|U|1202
9NLQ|1|R3|C|1203
9NLQ|1|R3|A|1204
9NLQ|1|R3|U|1205
9NLQ|1|R3|G|1206
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain M
- mRNA
- Chain sc
- Small ribosomal subunit protein uS3
- Chain sj
- 30S ribosomal protein S10
- Chain sn
- Small ribosomal subunit protein uS14
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