IL_9NLS_105

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9NLS|1|R1|U|2689, 9NLS|1|R1|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_105 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0976

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9NLS|1|R1|U|2687
9NLS|1|R1|G|2688
9NLS|1|R1|U|2689
9NLS|1|R1|U|2690
9NLS|1|R1|C|2691
*
9NLS|1|R1|G|2718
9NLS|1|R1|G|2719
9NLS|1|R1|U|2720
9NLS|1|R1|A|2721
9NLS|1|R1|G|2722

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 19

50S ribosomal protein L19

Chain 3

50S ribosomal protein L3