IL_9NLS_168

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9NLS|1|R3|A|1257, 9NLS|1|R3|A|1280, 9NLS|1|R3|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_168 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.4272

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9NLS|1|R3|G|1255
9NLS|1|R3|A|1256
9NLS|1|R3|A|1257
9NLS|1|R3|G|1258
*
9NLS|1|R3|C|1277
9NLS|1|R3|G|1278
9NLS|1|R3|G|1279
9NLS|1|R3|A|1280
9NLS|1|R3|C|1281
9NLS|1|R3|C|1282

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sj

30S ribosomal protein S10

Chain sn

Small ribosomal subunit protein uS14