IL_9NO7_049

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9NO7|1|A|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_049 not in the Motif Atlas

Geometric match to IL_9DFE_051

Geometric discrepancy: 0.0752

The information below is about IL_9DFE_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9NO7|1|A|C|1351
9NO7|1|A|U|1352
9NO7|1|A|A|1353
9NO7|1|A|A|1354
9NO7|1|A|G|1355
*
9NO7|1|A|C|1376
9NO7|1|A|G|1377
9NO7|1|A|A|1378
9NO7|1|A|A|1379
9NO7|1|A|G|1380

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2