IL_9NO7_050

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_050 not in the Motif Atlas

Geometric match to IL_9DFE_052

Geometric discrepancy: 0.2395

The information below is about IL_9DFE_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9NO7|1|A|U|1357
9NO7|1|A|G|1358
9NO7|1|A|A|1359
9NO7|1|A|A|1360
9NO7|1|A|G|1361
*
9NO7|1|A|C|1370
9NO7|1|A|G|1371
9NO7|1|A|U|1372
9NO7|1|A|A|1373
9NO7|1|A|G|1374

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2