IL_9NO7_119
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 9NO7|1|a|U|244, 9NO7|1|a|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NO7_119 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.0604
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.5
- Basepair signature
- cWW-cSS-tSS-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9NO7|1|a|C|242
9NO7|1|a|A|243
9NO7|1|a|U|244
9NO7|1|a|C|245
9NO7|1|a|A|246
9NO7|1|a|G|247
*
9NO7|1|a|C|277
9NO7|1|a|G|278
9NO7|1|a|A|279
9NO7|1|a|C|280
9NO7|1|a|G|281
9NO7|1|a|A|282
9NO7|1|a|C|283
9NO7|1|a|G|284
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
Coloring options: