IL_9NO7_129
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9NO7|1|a|A|532, 9NO7|1|a|U|534, 9NO7|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NO7_129 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.1474
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NO7|1|a|G|515
9NO7|1|a|PSU|516
9NO7|1|a|G|517
9NO7|1|a|C|518
9NO7|1|a|C|519
9NO7|1|a|A|520
9NO7|1|a|G|521
*
9NO7|1|a|C|528
9NO7|1|a|G|529
9NO7|1|a|G|530
9NO7|1|a|U|531
9NO7|1|a|A|532
9NO7|1|a|A|533
9NO7|1|a|U|534
9NO7|1|a|A|535
9NO7|1|a|C|536
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S12
- Chain v
- CYS-Stop mRNA
- Chain w
- Peptide chain release factor 1
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