IL_9NO7_160

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_160 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0624

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9NO7|1|a|C|1303
9NO7|1|a|G|1304
9NO7|1|a|G|1305
9NO7|1|a|A|1306
9NO7|1|a|U|1307
9NO7|1|a|U|1308
*
9NO7|1|a|A|1329
9NO7|1|a|U|1330
9NO7|1|a|G|1331
9NO7|1|a|A|1332
9NO7|1|a|A|1333
9NO7|1|a|G|1334

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain u

30S ribosomal protein Thx