IL_9NPY_013
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (4AC)G*CA(OMG)
- Length
- 5 nucleotides
- Bulged bases
- 9NPY|1|i|A|1489
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NPY_013 not in the Motif Atlas
- Geometric match to IL_8CRE_455
- Geometric discrepancy: 0.0943
- The information below is about IL_8CRE_455
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 160
Unit IDs
9NPY|1|i|4AC|1337
9NPY|1|i|G|1338
*
9NPY|1|i|C|1488
9NPY|1|i|A|1489
9NPY|1|i|OMG|1490
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein uS3, RPS3
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: