IL_9NPY_016
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CAUGC*(OMG)AGG
- Length
- 9 nucleotides
- Bulged bases
- 9NPY|1|i|U|1397
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NPY_016 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3278
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 41
Unit IDs
9NPY|1|i|C|1395
9NPY|1|i|A|1396
9NPY|1|i|U|1397
9NPY|1|i|G|1398
9NPY|1|i|C|1399
*
9NPY|1|i|OMG|1447
9NPY|1|i|A|1448
9NPY|1|i|G|1449
9NPY|1|i|G|1450
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain R
- 40S ribosomal protein eS17, RPS17
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain g
- RACK1
Coloring options: