IL_9NPY_017

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

9NPY|1|i|C|1403, 9NPY|1|i|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NPY_017 not in the Motif Atlas

Geometric match to IL_8CRE_481

Geometric discrepancy: 0.1362

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

9NPY|1|i|A|1402
9NPY|1|i|C|1403
9NPY|1|i|U|1404
9NPY|1|i|A|1405
*
9NPY|1|i|U|1441
9NPY|1|i|OMU|1442
9NPY|1|i|C|1443
9NPY|1|i|U|1444

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein uS9, RPS16

Chain U

40S ribosomal protein uS10, RPS20