IL_9NPY_020

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9NPY|1|i|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NPY_020 not in the Motif Atlas

Geometric match to IL_5J7L_311

Geometric discrepancy: 0.3098

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9NPY|1|i|C|1416
9NPY|1|i|C|1417
*
9NPY|1|i|G|1422
9NPY|1|i|C|1423
9NPY|1|i|G|1424

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein uS9, RPS16

Chain T

40S ribosomal protein eS19, RPS19