3D structure

PDB id
9NPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UAC*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NPY_024 not in the Motif Atlas
Geometric match to IL_5AOX_001
Geometric discrepancy: 0.1656
The information below is about IL_5AOX_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

9NPY|1|i|U|1560
9NPY|1|i|A|1561
9NPY|1|i|C|1562
*
9NPY|1|i|G|1573
9NPY|1|i|C|1574
9NPY|1|i|G|1575

Current chains

Chain i
18S ribosomal RNA

Nearby chains

Chain T
40S ribosomal protein eS19, RPS19

Coloring options:


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