IL_9O3J_281
3D structure
- PDB id
- 9O3J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3J_281 not in the Motif Atlas
- Geometric match to IL_9DFE_114
- Geometric discrepancy: 0.0769
- The information below is about IL_9DFE_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9O3J|1|2B|C|71
9O3J|1|2B|G|72
9O3J|1|2B|A|73
9O3J|1|2B|U|74
9O3J|1|2B|G|75
9O3J|1|2B|G|76
9O3J|1|2B|U|77
9O3J|1|2B|A|78
9O3J|1|2B|C|79
*
9O3J|1|2B|G|98
9O3J|1|2B|G|99
9O3J|1|2B|A|100
9O3J|1|2B|G|101
9O3J|1|2B|A|102
9O3J|1|2B|G|103
9O3J|1|2B|U|104
9O3J|1|2B|A|105
9O3J|1|2B|G|106
Current chains
- Chain 2B
- 5S Ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2Z
- 50S ribosomal protein L25
Coloring options: