IL_9O3W_104
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 9O3W|1|L5|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_104 not in the Motif Atlas
- Homologous match to IL_8GLP_108
- Geometric discrepancy: 0.0305
- The information below is about IL_8GLP_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.3
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9O3W|1|L5|C|2867
9O3W|1|L5|G|2868
9O3W|1|L5|U|2869
9O3W|1|L5|A|2870
9O3W|1|L5|A|2871
9O3W|1|L5|C|2872
*
9O3W|1|L5|G|2877
9O3W|1|L5|G|2878
9O3W|1|L5|A|2879
9O3W|1|L5|U|2880
9O3W|1|L5|A|2881
9O3W|1|L5|A|2882
9O3W|1|L5|G|2883
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- Small ribosomal subunit protein eS32
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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