IL_9O3W_234

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GACAGGA(OMU)UG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9O3W|1|S2|G|1285, 9O3W|1|S2|U|1314

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|G|1281
9O3W|1|S2|A|1282
9O3W|1|S2|C|1283
9O3W|1|S2|A|1284
9O3W|1|S2|G|1285
9O3W|1|S2|G|1286
9O3W|1|S2|A|1287
9O3W|1|S2|OMU|1288
9O3W|1|S2|U|1289
9O3W|1|S2|G|1290
*
9O3W|1|S2|C|1309
9O3W|1|S2|U|1310
9O3W|1|S2|C|1311
9O3W|1|S2|G|1312
9O3W|1|S2|A|1313
9O3W|1|S2|U|1314
9O3W|1|S2|U|1315
9O3W|1|S2|C|1316

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10

Chain SM

Small ribosomal subunit protein eS12

Chain Sd

Small ribosomal subunit protein uS14

Chain Sf

Ubiquitin-ribosomal protein eS31 fusion protein