IL_9O3Y_038

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9O3Y|1|L5|G|748, 9O3Y|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|L5|G|745
9O3Y|1|L5|A|746
9O3Y|1|L5|A|747
9O3Y|1|L5|G|748
9O3Y|1|L5|G|749
9O3Y|1|L5|U|750
9O3Y|1|L5|G|751
9O3Y|1|L5|G|752
*
9O3Y|1|L5|U|911
9O3Y|1|L5|G|912
9O3Y|1|L5|U|913
9O3Y|1|L5|U|914
9O3Y|1|L5|A|915
9O3Y|1|L5|C|916
9O3Y|1|L5|A|917
9O3Y|1|L5|G|918
9O3Y|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20