IL_9OFV_001

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9OFV|1|i|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_001 not in the Motif Atlas

Geometric match to IL_8CRE_002

Geometric discrepancy: 0.228

The information below is about IL_8CRE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9OFV|1|f|C|7
9OFV|1|f|C|8
*
9OFV|1|i|G|150
9OFV|1|i|C|151
9OFV|1|i|G|152

Current chains

Chain f

25S rRNA

Chain i

5.8S rRNA

Nearby chains

Chain b0

60S ribosomal protein L25

Chain p

60S ribosomal protein L8-A