IL_9OFV_004
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 9OFV|1|f|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_004 not in the Motif Atlas
- Geometric match to IL_8CRE_005
- Geometric discrepancy: 0.0508
- The information below is about IL_8CRE_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9OFV|1|f|C|31
9OFV|1|f|U|32
9OFV|1|f|G|33
9OFV|1|f|A|34
9OFV|1|f|A|35
9OFV|1|f|C|36
9OFV|1|f|U|37
9OFV|1|f|U|38
*
9OFV|1|f|A|45
9OFV|1|f|U|46
9OFV|1|f|C|47
9OFV|1|f|A|48
9OFV|1|f|A|49
9OFV|1|f|U|50
9OFV|1|f|A|51
9OFV|1|f|A|52
9OFV|1|f|G|53
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L28
- Chain W
- 60S ribosomal protein L37-A
- Chain b
- 60S ribosomal protein L42-A
- Chain t
- 60S ribosomal protein L13-A
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