IL_9OFV_006

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

9OFV|1|f|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_006 not in the Motif Atlas

Geometric match to IL_8CRE_007

Geometric discrepancy: 0.0601

The information below is about IL_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9OFV|1|f|A|123
9OFV|1|f|U|124
*
9OFV|1|f|A|144
9OFV|1|f|G|145
9OFV|1|f|U|146
9OFV|1|f|U|147
9OFV|1|f|G|148
9OFV|1|f|U|149

Current chains

Chain f

25S rRNA

Nearby chains

Chain i

5.8S ribosomal RNA; 5.8S rRNA

Chain p

60S ribosomal protein L8-A