IL_9OFV_054

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9OFV|1|f|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_054 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1324

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9OFV|1|f|G|1262
9OFV|1|f|A|1263
9OFV|1|f|G|1264
9OFV|1|f|U|1265
9OFV|1|f|G|1266
*
9OFV|1|f|C|1275
9OFV|1|f|U|1276
9OFV|1|f|C|1277

Current chains

Chain f

25S rRNA

Nearby chains

Chain z

Large ribosomal subunit protein uL11A