IL_9OFV_057
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 9OFV|1|f|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_057 not in the Motif Atlas
- Geometric match to IL_8CRE_063
- Geometric discrepancy: 0.072
- The information below is about IL_8CRE_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
9OFV|1|f|U|1388
9OFV|1|f|G|1389
9OFV|1|f|A|1390
9OFV|1|f|C|1391
9OFV|1|f|G|1392
9OFV|1|f|A|1393
9OFV|1|f|A|1394
9OFV|1|f|G|1395
*
9OFV|1|f|U|1415
9OFV|1|f|C|1416
9OFV|1|f|G|1417
9OFV|1|f|A|1418
9OFV|1|f|A|1419
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L17-A
- Chain L
- 60S ribosomal protein L26-A
- Chain R
- Large ribosomal subunit protein eL32
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- Large ribosomal subunit protein uL4A
- Chain n
- Large ribosomal subunit protein eL6B
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