IL_9OFV_063

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

9OFV|1|f|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_063 not in the Motif Atlas

Geometric match to IL_8P9A_293

Geometric discrepancy: 0.3245

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9OFV|1|f|G|1623
9OFV|1|f|G|1624
*
9OFV|1|f|U|1819
9OFV|1|f|U|1820
9OFV|1|f|U|1821
9OFV|1|f|C|1822

Current chains

Chain f

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L34-A

Chain d

60S ribosomal protein L41-A