IL_9OFV_072

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_072 not in the Motif Atlas

Geometric match to IL_8CRE_079

Geometric discrepancy: 0.0732

The information below is about IL_8CRE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22829.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9OFV|1|f|A|1883
9OFV|1|f|A|1884
9OFV|1|f|U|1885
9OFV|1|f|A|1886
9OFV|1|f|A|1887
9OFV|1|f|U|1888
9OFV|1|f|G|1889
*
9OFV|1|f|C|2346
9OFV|1|f|U|2347
9OFV|1|f|A|2348
9OFV|1|f|U|2349

Current chains

Chain f

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L17-A

Chain Q

60S ribosomal protein L31-A

Chain k

Large ribosomal subunit protein uL3