IL_9OFV_085

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_085 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.1774

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

9OFV|1|f|G|2206
9OFV|1|f|A|2207
9OFV|1|f|A|2208
9OFV|1|f|U|2209
9OFV|1|f|G|2210
*
9OFV|1|f|C|2235
9OFV|1|f|G|2236
9OFV|1|f|C|2237

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain j

60S ribosomal protein L2-A