IL_9OFV_089

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_089 not in the Motif Atlas

Geometric match to IL_8P9A_319

Geometric discrepancy: 0.069

The information below is about IL_8P9A_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

9OFV|1|f|G|2391
9OFV|1|f|C|2392
9OFV|1|f|G|2393
9OFV|1|f|G|2394
*
9OFV|1|f|U|2986
9OFV|1|f|A|2987
9OFV|1|f|C|2988

Current chains

Chain f

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L17-A

Chain a0

60S ribosomal protein L16-A

Chain k

Large ribosomal subunit protein uL3