IL_9OFV_092

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9OFV|1|f|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_092 not in the Motif Atlas

Geometric match to IL_8P9A_322

Geometric discrepancy: 0.0647

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9OFV|1|f|G|2412
9OFV|1|f|A|2413
*
9OFV|1|f|U|2807
9OFV|1|f|A|2808
9OFV|1|f|C|2809
9OFV|1|f|C|2810

Current chains

Chain f

25S rRNA

Nearby chains

Chain 1

CAT-tailed nascent peptide

Chain j

60S ribosomal protein L2-A

Chain y

Transfer RNA; tRNA