IL_9OFV_096

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_096 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3004

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9OFV|1|f|G|2466
9OFV|1|f|G|2467
9OFV|1|f|A|2468
9OFV|1|f|G|2469
*
9OFV|1|f|C|2476
9OFV|1|f|G|2477
9OFV|1|f|C|2478
9OFV|1|f|C|2479
9OFV|1|f|A|2480
9OFV|1|f|G|2481
9OFV|1|f|U|2482
9OFV|1|f|G|2483
9OFV|1|f|A|2484
9OFV|1|f|A|2485
9OFV|1|f|A|2486
9OFV|1|f|U|2487
9OFV|1|f|A|2488
9OFV|1|f|C|2489

Current chains

Chain f

25S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein uL1A