IL_9OFV_107

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9OFV|1|f|G|2945, 9OFV|1|f|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_107 not in the Motif Atlas

Geometric match to IL_8CRE_116

Geometric discrepancy: 0.0422

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9OFV|1|f|C|2879
9OFV|1|f|U|2880
9OFV|1|f|C|2881
*
9OFV|1|f|G|2943
9OFV|1|f|U|2944
9OFV|1|f|G|2945
9OFV|1|f|A|2946
9OFV|1|f|G|2947

Current chains

Chain f

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L23-A

Chain k

Large ribosomal subunit protein uL3