IL_9OFV_109

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_109 not in the Motif Atlas

Geometric match to IL_8P9A_337

Geometric discrepancy: 0.0573

The information below is about IL_8P9A_337

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9OFV|1|f|C|2889
9OFV|1|f|A|2890
9OFV|1|f|U|2891
*
9OFV|1|f|G|2912
9OFV|1|f|C|2913
9OFV|1|f|G|2914

Current chains

Chain f

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L23-A

Chain k

Large ribosomal subunit protein uL3