IL_9OFV_114
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 9OFV|1|f|A|3142, 9OFV|1|f|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_114 not in the Motif Atlas
- Geometric match to IL_8P9A_342
- Geometric discrepancy: 0.0631
- The information below is about IL_8P9A_342
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
9OFV|1|f|C|3004
9OFV|1|f|A|3005
9OFV|1|f|A|3006
9OFV|1|f|U|3007
*
9OFV|1|f|A|3139
9OFV|1|f|G|3140
9OFV|1|f|A|3141
9OFV|1|f|A|3142
9OFV|1|f|C|3143
9OFV|1|f|G|3144
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a0
- 60S ribosomal protein L16-A
- Chain k
- Large ribosomal subunit protein uL3
Coloring options: